Wednesday, August 31, 2011

Blog August 31 My books

ELOF AXEL CARLSON

Books Published




1. The Gene: A Critical History Saunders 1966
I showed how the idea of hereditary units evolved from mid-19th century to the early 1960s. In each chapter I showed how a new idea or interpretation contended with one or more rival views of the same data. I explored what made one side win out and why some concepts are revived a generation or more after they were in contention. The entire book was based on my reflections on published articles of those in contention.
2. Genes, Radiation and Society: The Life and Work of H. J. Muller Cornell 1981
Muller was my mentor and I used interviews of his colleagues and students as well as the many tens of thousands of letters in the IU Lilly Library archives to construct his life and relate it to his scientific work and his applications of science to society. I found his social views on science (positive genetics by choice and radiation protection) consistent but his basic science shiftged with each new institution he joined. Muller was intense, committed, idealistic, and often wrong in his trust in the leadership of movements he admired. He had contradictory features to his personality and generated foes as often as generated admirers. His ability to bounce back from his set-backs, many self-imposed, I found remarkable.

3. Human Genetics (text) Heath 1984
I used this as a text for my Biology 101-102 course at Stony Brook University. My non-majors course did not fit the prevailing market’s idea of a biology for non-majors text. I felt it was better to work with most of what I taught than to teach a course for lower division undergraduates with no text book at all. In this book I covered the cell, the gene, developmental biology (the life cycle), evolution, and molecular biology. I considered these five concepts the foundation for understanding biology. I related problems of society to these five concepts and felt I had provided the science a person needs to know to be an informed citizen.

4. The Unfit: A History of a Bad Idea Cold Spring Harbor Laboratory Press, 2001
This is a history of the roots of eugenics, before eugenics had its name in 1883. People have designated other people as unfit to reside among their peers or even unfit to live since biblical history was recorded. It shifted from transgressions against God as the cause of their being unfit to a scientific basis in the 1700s when masturbation became the first alleged cause of unfit people described as degenerates. Degeneracy theory had a strong appeal in the nineteenth century as the industrial revolution created urbanization and the problems of dealing with paupers, psychotics, the mentally retarded, vagrants, orphans, the physically handicapped, the aged, and the criminal. After Weismann’s work on the germplasm as unaltered by environmental conditions, the isolation of degenerates occupied social workers and physicians, leading to the asylum movement, marriage law restrictions, and compulsory sterilization of the unfit. I show how the two wings of the eugenics movement revolved in the 20th century and why state-mandated eugenics died.

5. Mendel’s Legacy: The Origin of Classical Genetics Cold Spring Harbor Laboratory Press 2004
Classical genetics was assembled from breeding analysis, cell biology, reproductive biology, evolution, population genetics, and biochemistry. Molecular genetics begins in the 1950s with the recognition of nucleic acids as the chemical basis for gene structure and function. I show how these components developed, most of them initially in Europe and by 1902-1920 mostly in the United States with the theory of the gene and the chromosome theory of heredity. I argue that the American PhD starting at Johns Hopkins University in 1876 created the interdisciplinary approach that brought about these unions of disciplines. I also argue that incrementalism and new technologies are characteristic of biological revolutions and not paradigm shifts.

6. Times of Triumph, Times of Doubt, Science and the Battle for Public Trust Cold Spring Harbor Laboratory Press, 2006
Scientists are often idealistic and have good intentions when applying their knowledge to society. Why then are there bad outcomes that sometimes arise from these applications. I discuss these concerns for thalidomide, radiation usage, DES or diethylstilbestrol in medicine, DDT and other pesticides, Agent Orange and other herbicides, eugenics, and other instances of known failures. There are also fears of science that are unjustified and that have not led to harm such recombinant DNA technology and genetically modified foods. I argue that where regulation is either self-imposed or regulated by the state, there is a more careful monitoring of the transition of laboratory findings to commercial or health usage.

7. Neither Gods nor Beasts: How Science Is Changing Who We Think We Are. Cold Spring Harbor Laboratory Press, 2008
Many philosophers and scientists accept a universal human nature for our species. I argue that this is disputable. But what is not disputable is the way we transform our understanding of ourselves and society through new knowledge, especially scientific findings. I show how this came about first through human anatomy and physiology, leading to a shared understanding of the mammalian body that made it likely an evolutionary origin would be found to explain those resemblances. I show that when the microscope was added to the tools for studying our bodies, we became aware of our cellular composition. This led in turn to the recognition of cells associated with reproduction. This led to the recognition of chromosomes involved in the fertilization process and the genes in those chromosomes as the basis for life itself. With the introduction of biochemical processes and their genetic control in the 1940s humans began to see themselves differently. It led to concepts of molecular disease, of the kinship we can explore through our DNA sequences, and the deep understanding of fundamental processes in metabolism. None of these could have been predicted by theory alone. As we begin to isolated our neuronal functions, synaptic associations, and genetic functioning in regions of our brains that understanding will be more surprising and informative to our sense of who we are.
8. Mutation: The History of an Idea From Darwin to Genomics. Cold Spring Harbor Laboratory Press, 2011
This work covers the evolution of scientific language and how it changes each generation in response to new findings and new technologies. I begin with Darwinian fluctuations, the idea of “bud sports,” atavisms, and the amateur breeder’s vocabulary of the mid 1800s. I show how Bateson introduced a new set of terms (homeotic and meristic variations) and conflicts broke out over continuous and discontinuous traits as the driving mechanism of evolution. I show how Mendelism, the chromosome theory of heredity, and the work of Morgan and his students shifted the vocabulary of classical genetics. The molecular era had a similar transforming effect on genetics, with base replacements, transitions, transversions, and frame shift events associated with point mutations. As tools revealed DNA sequences and as gene structure proved more complex than bacterial models, the vocabulary for introns, exons, splicing, and other features of genetic transcription and translation multiplied. Popular views of mutations also changed with somewhat different meanings associated with the new terminology.







Other books (edited):

9. Modern Biology Braziller 1967
I use a selection of articles or excerpts from books that first introduced ideas of the cell, the gene, the life cycle, evolution, and molecular biology. I intended it for classes where undergraduate students could learn about how science works through reading of original published research articles.

10. Man’s Future Birthright: Essays on science and Humanity by H. J. Muller [edited by Elof Carlson] SUNY Press 1973
Muller’s social essays include his views on eugenics, radiation safety, reading science fiction, extraterrestrial life, freedom, peace, the evolution of values, and his views of what the world will be like in 100 years.


11. The Modern Concept of Nature: Essays on theoretical biology by H. J, Muller [edited by Elof Carlson] SUNY Press 1973
I chose essays on mutation, inducing mutations with radiation, chromosome breakage as a tool, how physics can solve genetic problems, genetics in relation to evolution, and the gene as the basis of life,

12. Gene Theory Dickenson Publishing Company 1967
The articles I included were on gene continuity and discontinuity, pseudoallelism, genetic fine structure, the structure of DNA, on genetic colinearity, on the molecular basis of mutation, on the operon model of regulation, and three different views of the gene.


Books in preparation:

1. Sex Determination: A History [in production, Indiana University Press, estimated date of issue, September 2012]
I cover views of sex determination in antiquity based on anatomy, temperature, activity, and celestial events. I introduce Aristotle’s, Plato’s, and Galen’s views of sex determination and their influences in medieval thinking on sex determination. I cover the discovery of the egg, the discovery of sperm, the proof that a union of one egg and one sperm results in a new life cycle, the working out of male and female reproductive organs, the discovery of sex hormones, the chromosomal basis of sex determination, comparative sex determination across the phyla, and the genetic and molecular basis for sex determination. I show the imperfections of the sex determining process and the formation of chimeras, mosaics, hermaphrodites, and pseudohermaphrodites. I distinguish the sex determination phenomena from gender differentiation and socializing and show how this has led to conflicts of religion, society, the law, and the public perception of sex. I attempt to relate the top down (gender studies) approach with the bottom up ( biological) approaches.
2. Agent Orange: How a plant growth hormone became an agent of war [sixth draft completed]
The idea of physical or chemical influences on plant growth begin with Darwin’s experiments on plant responses to light and gravity. In the early twentieth century plant diffusible substances were identified as controlling the bending of stems by differential cell multiplication. The hormone involved was called auxin. By the 1930s synthetic auxins were being tested as plant regulators to produce seedless varieties and to stimulate rapid growth from cuttings and isolated plant tissue. During World War II the synthetic auxins 24D and 245T were identified as agents that could kill broad-leafed plants. The research was shifted to secret studies at Fort Dietrich in the US and independently by British investigators to see if these agents could be used to destroy crops of the enemy. The war ended before they could be used. They were revived by the British in the Malay insurgency and adopted by the Vietnamese through consultation with US military and defense research agencies (especially DARPA). The escalating use of a mixture of these two agents, called Agent Orange, resulted in substantial ecological changes in the sprayed areas but the military value is disputed by the military itself. Health effects have been reported since the first synthesis of chlorinated herbicides in the factories that make them, among civilians exposed to them, and among workers spraying them. Of particular concern after the war ended was the effect on Us and other veterans as well as on the Vietnamese population. I show that a clear cut answer is not possible and that there is presently no way to assess the actual damage done to health or heredity of these veterans. The issue is essentially a political one and not a scientific one.

3. Faust: My First 50 Years [a novel, second draft completed]
4. A More Perfect Union [a novel, first draft completed]
5. Bits and Pieces: A Memoir of my Youth [first draft completed]
6. Memoirs of Florence Dawald Miller [completed, privately printed, Bloomington Indiana July 2011]
7. Dialogs with my Dead Father [first draft completed]
8. Human and medical genetics: a history [eight chapters done of projected 24]
9. Life Lines [100 essays from my newspaper column, first draft completed]
10. My Heroes [7 of 17 chapters completed]
11. The Pleasures of Living: How to enjoy life without relying on the supernatural [First draft completed]
12. The Good Teacher [first draft completed]
13. The Biology of Human Sexuality [text, first draft completed]
14. The last Evolutionist [novel, first draft completed]
15. The Science Maven [novel, first draft completed]
16. Genes, Sex, and Evolution: A discussion [novel written as Platonic dialogs, first draft completed]

If you are an editor, publisher, or literary agent and wish more details on my unpublished books and works in progress, please contact me at ecarlson31@gmail.com

Monday, August 8, 2011

Review of latest book Mutation in Human Genetics

I was pleased to read Peter Harper's fine review of my book on the history of mutation. It appears in the journal Human Genetics July 2011. Harper is a medical geneticist who has written an excellent history of medical genetics. He is at the University of Cardiff, Wales, UK.

Monday, July 25, 2011

July 25 2011 First Review of my book on Mutation

Home » Genome Technology
A History of Mutation Shows How the Concept Has Changed Science
July/August 2011
By Christie Rizk

The word "mutation" means something different to a comic book enthusiast than
it does to a genetic researcher. But even as it pertains to science, the idea of mutation
has meant different things over time, changing greatly from how Darwin perceived it to
how it is used in the context of the genome.

It is this evolution of the concept of mutation that drives Elof Axel Carlson's new book,
Mutation: The History of an Idea from Darwin to Genomics. Carlson, a professor emeritus
at the State University of New York at Stony Brook, says most geneticists today
conceptualize 'mutation' as a change in an individual gene — an idea that dates back to
the work of Nobel laureate Hermann Joseph Muller in the 1920s. But that is not how it
always was. The term mutation itself has mutated and evolved to suit what researchers
have learned since the time of Darwin.

Beginning with Darwin and pre-Mendelian ideas of what mutation was, continuing through
the Mendelian aspects, work done by Thomas Hunt Morgan with fruit flies, and continuing
through to the ideas of mutagenesis, biochemical approaches to the study of mutation, and
mutation in relation to evolution, Carlson admirably straddles the very fine line between
losing the reader in overly detailed explanations or by being so vague as to say nothing
at all.

The book is a quick read. It doesn't seek so much to re-educate readers on what mutation
is, as it does construct a timeline of how scientists have perceived it through the past
couple of centuries. "The idea of mutation is rooted in our awareness of change over
time," Carlson writes in his preface. "In the life sciences, consideration of
change is essential to evolutionary biology and also, perhaps less obviously, to the
study of genetics. … Many scientists tend to be unaware of how their colleagues of many
generations ago conceived their field. Examination of this process … has the added
benefit of informing us about the way ideas help or hinder the development of a field of
science." Carlson's book presents a history of the concept of mutation, but also a
history of how science itself has changed because of that word's evolution.

The author also seeks to make the reader aware that, though the definition of the word or
the concept of mutation may have changed over time, these changes are the result of
"accumulation of incremental knowledge based on new techniques and
experiments," and that in the "SNPs of the introns and exons of today's genes,
there are still echoes of Darwin's fluctuating variations." In seeking to lend a
sense of history to a word that is used often in today's science, Carlson succeeds.

Monday, March 21, 2011

March 21 2011 The questionable use of the phrase TOP SECRET

Whistle blowing has been of enormous help to law enforcement in revealing embezzlement, corporate theft, corporate piracy, stock market manipulation, tax evasion, and other illegal practices that might otherwise have gone undetected. Sometimes, as in Daniel Ellsberg’s Pentagon papers for the Vietnam War and for the presently imprisoned Wiki-leaks whistleblower, Bradley Manning and Wiki-leaks founder Julian Assange, public reaction is mixed. We don’t like snitches and sometimes we prefer loyalty to a scoundrel rather than the betrayal of the companies that employ the whistleblowers. I am much more sympathetic to the whistleblowers than I am to those with power who are doing something wrong.

I was shifted to this view while researching a book on Agent Orange which I am still writing and revising. Almost all of what I have written is based on primary sources obtained from documents in the Kennedy Library in Boston and in the Matthew Meselson collection at Harvard University. A substantial number of those documents are declassified from their status as Top Secret or Confidential. This is what I learned. Most of the documents involving policy decisions on the use of Agent Orange in the Vietnam War were not military documents but civilian documents from government agencies and White House personnel. Most had little to do with military secrets of importance to the enemy. They had a lot to do with finding ways to describe the use of Agent Orange as “weed-killers,” or as essentially harmless to human health, or as a Vietnamese program rather than a US program before we got heavily involved in that war. They included quite a few military documents that expressed doubts about the usefulness of using Agent Orange for defoliation of tropical forests, for revealing enemy bases hidden in those forests, or for starving the enemy troops into submission.
When one weighs the terrible damage done to people’s lives in times of war, especially so-called “collateral damage,” I believe the status of real heroes should be assigned to those who release these documents before they are declassified. A healthy debate on those issues by Congress (most of whom were not privy to these secret documents) might have saved more US lives (not to mention civilian and military Vietnamese lives) if the debates were informed with these findings. Instead policy was based on inadequate information or misleading information. It certainly illustrated to me the reporters’ credo that in times of war the first victim is truth.

Sunday, March 20, 2011

Blog March 20, 2011 EDUCATING AMERICAN CITIZENS FOR LIVING IN A SCIENCE-SATURATED 21ST CENTURY

How would you respond if you were asked the following questions:
(1) Would you prefer government agencies or private industries to regulate the toxic, mutagenic, carcinogenic, or teratogenic (embryo damaging) harm of the foods you eat, the cosmetics you use, or the products you buy for your household (insecticides, cleaners, air fresheners, paints, etc.)?
(2) Would you believe scientists working in the field with no financial benefit from corporations or scientists hired by these corporations on questions or claims such as “Is smoking tobacco safe?”; “Are carbon emissions by industry leading to global climate changes and a likely rise in sea waters by the end of this century? “; or “Nuclear reactors are safe and should be expanded in number throughout the United States.”
I suspect most people would prefer government regulation when it comes to our health from manufactured products. I suspect most people will favor some sort of effort to prevent serious climate change and its consequences rather than face a formidable response to such changes once they occur. I also suspect that most people distrust nuclear energy after three major failures and would oppose the construction of a nuclear reactor in their own neighborhood. Most of that response, I believe, comes from a public that does not like being lied to or deceived. Whenever self-interest predominates in an issue up for debate, voters get suspicious. But most voters probably have no scientific basis for choosing between the claims of government agencies, university scientists who are not beholden to industry, and those scientists whose employers are the companies themselves.
I would much prefer that the public was educated to know enough of the science involved to make informed decisions. There may be times when industry is right and the critics are wrong. That means we need both informed citizens and informed legislators.
I have written about 300 Life Lines articles on a variety of topics on the life sciences with multiple intent. I like to share my love of the life sciences. It is a thrill to learn of new insights into how cells work, how organisms are related to one another, the adaptations living things develop to cope with their environments, and the social implications of new science. Only about 5% of my Life Lines articles are political in the sense that I give my opinion on issues of science and society. For that reason I wish to use this Blog site to advocate my own point of view about science and society issues. I hope that some of you reading this will comment. It is good for the public to see the different views people have on how they came to their conclusions or why they disagree with my own interpretations. Most people do not comment on my Life Lines articles unless they are motivated by religious creationism or fundamentalism and disagree with an article that I write about evolution. But on other matters of deep concern to society I have gotten silence. I don’t know if those who disagree have good reasons for their views or if they are afraid to make arguments when they know virtually nothing about the science itself. I hope some of you will have courage to express your views.

Saturday, March 19, 2011

Blog March 19 2011 Is there a social contract for our health?

We believe that a government is a social contract between those who are governed and those who govern us with our consent. It is the basis of our own American government which is part democracy and part republic with lots of checks and balances and a Constitution to prevent tyranny. It is an imperfect system but it works reasonably well and we voters have the power to throw out administrations that fail us and we can shift to a new direction. We reject anarchy or extreme libertarianism (a sort of “devil get the hindmost” social Darwinian system) in which the government plays such a minimal role that each person is at the mercy of the good will of the rest of humanity. Herbert Spencer preached that extreme libertarianism some 150 years ago in his book Social Statics and he believed that everything should be privatized, except for the military. We should pay for our police protection, fire protection, health, testing of safety, and education. He opposed public schools because they preached loyalty to the state and he felt the individual should always be an enemy of the state, criticizing it for its encroachments on individual freedom. He also opposed colonialism, the institution of a Royal family, and discrimination against women. He felt all education should be autodidactic with the library (private , of course) as the source of knowledge instead of the classroom.
Unfortunately people are complex and do not work as ideal components of utopian dreams. Those utopian schemes often end up in totalitarian thinking, with conformity rather than cantankerous diversity as the favored state of society. If we are to live in a “real world” we have to recognize the following. Humans are mortal. They are genetically diverse. They are raised in diverse households with diverse idiosyncratic parenting. They are grossly varied in opportunities and the circumstances of their birth. Some will have birth defects (about 3 to 5 percent). Some will have infectious diseases and they vary in their immune systems. Some will have physical impairments of their senses and require eyeglasses or hearing aids. Some will have organ failures. Some will have autoimmune diseases. Some will get cancers. It may not be possible to tell who will be at risk for such disorders. To address our health problems we either have to be lucky and our families have the wealth to pay for needed surgery or medication or we have to have an affordable health insurance that provides most of our basic health needs. If we are born poor then the costs of such health care are beyond what our incomes can provide. If we have a government universal health insurance then the costs are spread across all citizens just as we pay for our military through taxation.
I have yet to hear a proposal from critics of Medicare and Medicaid of a private health insurance program that can exist for the poor. I can only assume that premature death and illness of the less fortunate are tolerable for those who are fortunate enough to buy their own very effective private health insurance plans. That is not just selfish it is morally disturbing. What it tells me is that it all right to ignore the needs of others as long as you yourself are OK. Is this what our religions have taught us? Is this the message of the “good Samaritan?” Is this compatible with the “ Golden rule?”

What surprises me is how we respond with haste to new epidemics but ignore chronic and “familiar” diseases that saturate a good portion of humanity. Here is the reality for the coming decades. We will have more old people who will have lots of chronic illnesses. We have shifted away from employer provided health insurance to individual provided health insurance but for most Americans they cannot afford the costs of private insurance. Private insurance, like fee for service medicine, is wildly expensive and has far outpaced inflation. Most individuals have no factual basis for making informed decisions on what type of health care to buy or what to do if they are not covered. We need to rethink how to provide care with numerous “triage type” health centers instead of hospital emergency rooms so less expensive physician assistants and RNs can assess minor health emergencies (e.g., colds, upset stomachs, sprains, minor cuts) and distinguish those from patients with profound or more complex medical needs. We also have to think about what type of health care should be available to the very old, especially those requiring assisted living. For those who can trade in the equity of their homes for such care this is usually not a problem. For the working class who live in apartments or homes which have more modest equity, this is a very serious problem. For legislators I have a prediction for them to consider. In a few years the very old will be such a significant portion of the population that they will have the votes to favor their own interests.

Thursday, March 17, 2011

Blog March 17 2011 Japanese Reactor Disaster

Thoughts on the Japanese reactor disaster in response to a query from my daughter, Christina Carlson who lives on the West coast.

I have followed the catastrophe in Japan with deep interest. It confirmed my feelings that nuclear reactors are a bad idea. I have always felt that when a highly complex system with dangerous outcomes meet unanticipated stresses, it has a risk of failing. That happens when dams break, Titanics sink, and Chernobyl/3 Mile Island/ and Japanese reactors fail. Most industrial backers will shy away from the costs of a well designed reactor that anticipates 9.0 earthquakes and 30 foot tsunamis or a terrorist attack, say a jet slamming into a reactor.

That is my first impression of my take on this bad outcome. I am concerned that two days ago there was a report that one of reactors “may” have had a partial meltdown with a release of 400 milliSieverts per hour. Since that’s about 40 roentgens per hour, just one day’s exposure would be an LD-50 [mean lethal dose] dose in which half of those receiving such a dose (400-500 R or 4 to 5 Sv) would die of radiation sickness. Fortunately, the efforts to pour sea water every day are working to some extent because within an hour or so the emitted dose was back to a fraction of that rate (1-10 mSv/hr). So the workers in the nuclear reactors are not dying of radiation sickness the way the Chernobyl workers did where the release was on-going because they had no way to flood the reactor for weeks and eventually had to entomb it in concrete.

The third impression is more difficult for me to assess. Low doses do cause small amounts of mutational damage (but not radiation sickness) so worldwide the effect will be trivial like the Chernobyl disaster for the US or most of the world. The regions that got clobbered were in Ukraine and by wind drift to Lapland and other parts of Europe. I still remember how disturbed I was when you were in Berlin at the time and giving me the doses that were being measured and reported on German radio and TV in Germany. But, of course that was because thousands of roentgens per day were being pumped for about two or three weeks into the atmosphere. I don’t know if the Japanese will contain this faster than the Russians, but I am encouraged that the rate fluctuates. Every time they dump more sea water in, the radiation emission drops by orders of magnitude which is a good thing. What I can’t assess is the condition of the spent rods and their ability to be doused with sea water and the cracked reactor (s). There may be two or more with such cracks.

If I were in Japan and could afford to leave, I would, especially with young children. As far as living on the West coast, I don’t see any way it would be possible for such diluted radioactive debris to fall out on coastal cities in worrisome amounts. It would be similar to nuclear fallout from weapons testing at the worst and those tossed the radioactive debris into the stratosphere which the Japanese reactors can’t do.
A last thought. The potassium iodide [ KI] tablets are not very useful on the west coast because I131 or other isotopes will be minuscule in dilution hitting the west coast. Most of that KI risk comes from drinking milk of cows that eat grass that grows on Iodine contaminated soil. It would be easier to monitor the milk and not use it if it’s above a certain low level. The KI had it been used in Ukraine in the first few days of heavy radiation they could have saved lots of children from thyroid cancers.

Radiation damage is proportional to dose. So a mSv is 0.1 R which is a chest x-ray dose (or for some machines, ten chest x-rays worth). The individual risk is very low of cancer and zero for any symptoms of radiation sickness. But a dose of 100 R or 1 Sv is very high and will cause symptoms of radiation sickness. But radiation decays inversely to the square of the distance so if you are several miles away from a 100 r release the amount getting that far will be in the small mSv range (about 1 to 10 mSv). What all this means is that anyone within a few feet of the reactor will be dangerously at risk if not heavily protected with lead shielding. The workers there are at high risk. But since no one should be in a radius of 12 miles or so, those outside that zone will be at relatively low risk unless a Chernoby-l like explosion heaves a plume into the stratosphere which drifts and rains down radioactive debris. That’s what I’ve been nervous about because of the unprotected spent fuel which is filled with radioactive isotopes.